2017

Kyle Briggs, Gregory Madejski, Martin Magill, Konstantinos Kastritis, Hendrick W de Haan, James L McGrath, and Vincent Tabard-Cossa,"DNA Translocations Through Nanopores Under Nanoscale Pre-Confinement", Nano Letters, 10.1021/acs.nanolett.7b03987 (2017).

     Related Projects:      Nanopores

Matthew Vandesande, Daniel Pasut, Hendrick W. de Haan,"Sorting polymers by size via an array of viscous posts", Electrophoresis, 10.1002/elps.201700136 (2017).

     Related Projects:      Polymers in Confinement

   2016

Magill M, Falconer C, Waller E, de Haan HW,"Translocation Time through a Nanopore with an Internal Cavity Is Minimal for Polymers of Intermediate Length", Physical Review Letters, 117, 247802 (2016).

     Related Projects:      Nanopores

Leith JS, Kamanzi A, Sean D, Berard D, Guthrie AC, McFaul CMJ, Slater GW, de Haan, HW, Leslie SR, "Free Energy of a Polymer in Slit-like Confinement from the Odijk Regime to the Bulk", Macromolecules, 10.1021/acs.macromol.6b01805 (2016).

     Related Projects:      Polymers in Confinement

de Haan HW,"Modeling and Simulating the Dynamics of Type IV Pili Extension of Pseudomonas aeruginosa", Biophysical Journal, http://dx.doi.org/10.1016/j.bpj.2016.09.050 (2016).

     Related Projects:      Twitcher Bacterial Cells

Vollmer S, de Haan HW,"Translocation is a nonequilibrium process at all stages: Simulating the capture and translocation of a polymer by a nanopore", Journal of Chemical Physics, 145, 154902 (2016).

     Related Projects:      Nanopores

Klotz AR, de Haan HW, Reisner WW,"Waves of DNA: Propagating excitations in extended nanoconfined polymers", Physical Review E, 94, 042603 (2016).

     Related Projects:      Polymers in Confinement

   2015

Klotz AR, Duong L, Mamaev M, de Haan HW, Chen JZY, Reisner WW, "Measuring the Confinement Free Energy and Effective Width of Single Polymer Chains via Single-Molecule Tetris", 10.1021/acs.macromol.5b00977 (2015).

     Related Projects:      Polymers in Confinement

Klotz AR, Mamaev M, Duong L, de Haan HW, Reisner WW, "Correlated Fluctuations of DNA between Nanofluidic Entropic Traps", DOI: 10.1021/acs.macromol.5b00961 (2015).

     Related Projects:      Polymers in Confinement

de Haan HW, Shendruk TN, "Force-Extension for DNA in a Nanoslit: Mapping between the 3D and 2D Limits", ACS Macro Letters, 4, 632-635 (2015).

     Related Projects:      Polymers in Confinement

Shendruk TN, Bertrand M, de Haan HW, Harden JL, Slater GW, "Simulating the Entropic Collapse of Coarse-Grained Chromosomes", Biophysical Journal, 108(4), 810-820 (2015).

     Related Projects:      Red Blood Cells      Bundling of Rods

de Haan HW, Sean D, Slater GW, "Using a Peclet number for the translocation of a polymer through a nanopore to tune coarse-grained simulations to experimental conditions", Physical Review E., 91, 022601 (2015).

     Related Projects:      Nanopores

Sean D, de Haan HW, Slater GW, "Translocation of a Polymer Through a Nanopore Starting From a Confining Nanotube", Electrophoresis, 36(5):682-91 (2015).

     Related Projects:      Nanopores

   2014

Shendruk TN, Bertrand M, Harden JL, Slater GW, de Haan HW,"Coarse-Grained Molecular Dynamics Simulations of Depletion-Induced Interactions for Soft Matter Systems", Journal of Chemical Physics, 141, 244910 (2014).

     Related Projects:      Red Blood Cells      Bundling of Rods

de Haan HW, Slater GW, "Biomolecule transport across biomembranes in the presence of crowding: Polymer translocation driven by concentration and disorder gradients", Physical Review E (Rapid Communication), 90, 020601(R) (2014).

     Related Projects:      Nanopores

McMullen A, de Haan HW, Tang JX, Stein D, "Stiff filamentous virus translocations through solid-state nanopores", Nature Communications, 5, 4171 (2014).

     Related Projects:      Nanopores

   2013

de Haan HW, Slater GW, "Translocation of a Polymer through a Nanopore across a Viscosity Gradient", Physical Review E, 87(4), 042604 (2013).

     Related Projects:      Nanopores

de Haan HW, Slater GW, "Translocation of a polymer through a nanopore modulated by a sticky site", Journal of Chemical Physics, 138(9), 094906 (2013).

     Related Projects:      Nanopores

de Haan HW, Slater GW, "Translocation of "rod-coil" polymers: probing the structure of single molecules within nanopores", Physical Review Letters, 110(4), 048101 (2013).

     Related Projects:      Nanopores

   2012

de Haan HW, Slater GW, "Using an Incremental Mean First Passage Approach to Explore the Viscosity Dependent Dynamics of the Unbiased Translocation of a Polymer through a Nanopore", Journal of Chemical Physics, 136(20), 204902 (2012).

     Related Projects:      Nanopores

de Haan HW, Slater GW, "Memory effects during the unbiased translocation of a polymer through a nanopore", Journal of Chemical Physics, 136(5), 154903 (2012).

     Related Projects:      Nanopores

de Haan HW, Paquet C, "Enhancement and degradation of the R2* relaxation rate resulting from the encapsulation of magnetic particles with hydrophilic coatings", Magnetic Resonance in Medicine, 66(6), 1759-66 (2011).

     Related Projects:      Nanoparticles

   2011

de Haan HW, "Mechanisms of Proton Spin Dephasing in a System of Magnetic Particles", Magnetic Resonance in Medicine, 66(6), 1748-58 (2011).

     Related Projects:      Nanoparticles

Paquet C, de Haan HW, Leek DM, Lin HY, Xiang B, Tian G, Kell A, Simard B, "Clusters of superparamagnetic iron oxide nanoparticles encapsulated in a hydrogel: a particle architecture generating a synergistic enhancement of the T2 relaxation", ACS Nano, 5(4), 3104-12 (2011).

     Related Projects:      Nanoparticles

de Haan HW, Slater GW, "An incremental mean first passage analysis for a quasistatic model of polymer translocation through a nanopore", Journal of Chemical Physics, 134, 154905 (2011).

     Related Projects:      Nanopores

de Haan HW, Gauthier MG, Chubynsky MV, Slater GW, "The Importance of Introducing a Waiting Time for Lattice Monte Carlo Simulations of a Polymer Translocation Process", Computer Physics Communications, 182(1), 29-32 (2011).

     Related Projects:      Nanopores

   2010

de Haan HW, Slater GW, "Mapping the Variation of the Translocation alpha Scaling Exponent with Nanopore Width", Physical Review E, 81(5), 051802 (2010).

     Related Projects:      Nanopores

   2009

Slater GW, Holm C, Chubynsky MV, de Haan HW, Dube A, Grass K, Hickey OA, Kingsburry C, Sean D, Shendruk TN, Zhan L, "Modeling the separation of macromolecules: a review of current computer simulation methods", Electrophoresis, 30(5), 792-818 (2009).

     Related Projects:      Nanopores

   2006

de Haan HW, Tolokh IS, Goldman S, and Gray CG, "Nonequilibrium Molecular Dynamics Calculation of the Conductance of the KcsA Potassium Ion Channel", Phys. Rev. E, 2006, 74, 030905 (2006).

     Related Projects:      Proteins

      Hendrick de Haan : hendrick.dehaan@uoit.ca       ||       faculty.uoit.ca/dehaan/cNAB.LAB